Logos Bible Software supports the concept of a workspace. Workspaces are used in different ways by all sorts of people. The basic idea is for the software to keep track of your window arrangement, open texts, linked windows and other stuff.
Awhile back, on my personal blog, I blogged on how I've got my primary workspace set up. I thought it would be fun to share that here too. Click the above link or the picture to head to the article.
I've had a decent amount of feedback from folks that this article helped them understand a bit more about workspaces and gave them some insights to relationships between texts. If you work in the New Testament, and if you work through the Greek word-by-word, then you may enjoy checking it out.
Thanks for the reply! May the Lord bless you as you present your paper!
SDG